Tumor-specific delivery of therapeutic agents via liposomase

ABSTRACT

Clostridium novyi  is an obligate anaerobe that can infect hypoxic regions within experimental tumors. We found that mice bearing large, established tumors were often cured when treated with  C. novyi  plus a single dose of liposomal doxorubicin. The secreted factor responsible for this phenomenon was identified and, surprisingly, proved to be a member of the lipase family. The gene encoding this protein, called liposomase, has the potential to be incorporated into diverse therapeutic methods to deliver specifically a variety of chemotherapeutic agents to tumors.

This application claims the benefit of U.S. provisional application Ser.No. 60/814,546 filed Jun. 19, 2007, the disclosure of which is expresslyincorporated herein.

The U.S. Government retains certain rights in the invention according tothe provisions of a grant from the NIH, CA 62924.

TECHNICAL FIELD OF THE INVENTION

This invention is related to the area of oncology. In particular, itrelates to treatment of tumors which enhance the selective toxicity ofanti-cancer agents.

BACKGROUND OF THE INVENTION

There is no dearth of drugs that can kill cancer cells. The challenge isachieving specificity, i.e., killing the cancer cells while sparing thenormal cells. There are three basic strategies now used to accomplishthis specificity. One (selective toxicity) employs drugs that have morepotent growth-inhibitory effects on tumor cells than on normal cells (1,2) This strategy underlies the success of conventional chemotherapeuticagents as well as those of newer targeted therapies such as imatinib.The second strategy (delivery) employs agents such as antibodies orgenes that specifically react with tumor cells or are predominantlyexpressed within tumor cells, respectively (3, 4). The third strategy(angiogenic) exploits abnormal aspects of tumor vasculature with agentssuch as Avastin (5, 6) or drugs incorporated into liposomes (7).Liposomes are relatively large particles that can penetrate through thefenestrated endothelium present in tumors and a few other organs (8, 9).Once they gain access to tumors, they persist and eventually releasetheir contents and raise local drug concentrations through the enhancedpermeabilization and retention (EPR) effect (10). Though each of thesestrategies has proven merit, the therapeutic results achieved areusually less than desired. The problems arise, in part, because theachieved specificity with any one of them is imperfect, limiting theamount of drug that can be safely administered without causing systemictoxicity.

There is a continuing need in the art to develop treatments for cancersthat are more effective and less toxic.

SUMMARY OF THE INVENTION

According to one embodiment of the invention a composition is provided,useful for delivering therapeutic agents. The composition comprisestoxin-defective Clostridium novyi spores; and a liposome comprising ananti-tumor drug or biological agent.

According to another embodiment of the invention another composition isprovided. The composition comprises a toxin-defective Clostridium novyiliposomase according to SEQ ID NO: 1 or according to SEQ ID NO: 1 with asubstitution mutation in the GXSXG lipase motif (residues 160-164 of SEQID NO: 1) and a liposome comprising an anti-tumor drug or biologicalagent.

Another aspect of the invention is a kit. The kit comprises atoxin-defective Clostridium novyi liposomase according to SEQ ID NO: 1or according to SEQ ID NO: 1 with a substitution mutation in the GXSXGlipase motif; and a liposome comprising an anti-tumor drug or biologicalagent.

Still another aspect of the invention is a kit. The kit comprisestoxin-defective Clostridium novyi spores; and a liposome comprising ananti-tumor drug or biological agent.

Yet another embodiment of the invention is a method of treating a cancerpatient. A first agent which is toxin-defective Clostridium novyi sporesand a second agent which is a liposome comprising an anti-tumor drug orbiological agent are administered to the cancer patient. The tumorthereby regresses or its growth is slowed or arrested.

An additional aspect of the invention is a method of treating a cancerpatient in which a first agent and a second agent are administered tothe cancer patient. The first agent is a toxin-defective Clostridiumnovyi liposomase according to SEQ ID NO: 1 or according to SEQ ID NO: 1with a substitution mutation in the GXSXG lipase motif, and the secondagent is a liposome comprising an anti-tumor drug or biological agent.The tumor thereby regresses or its growth is slowed or arrested.

Also provided by the present invention is a method of treating a cancerpatient in which a first and a second agent are administered to thecancer patient. The first agent is a vector encoding toxin-defectiveClostridium novyi liposomase according to SEQ ID NO: 1 or according toSEQ ID NO: 1 with a substitution mutation in the GXSXG lipase motif, anda second agent is a liposome comprising an anti-tumor drug or biologicalagent. The tumor thereby regresses or its growth is slowed or arrested.

The present invention also provides a composition comprising an isolatedand purified toxin-defective Clostridium novyi liposomase proteinaccording to SEQ ID NO: 1 or according to SEQ ID NO: 1 with asubstitution mutation in the GXSXG lipase motif.

The invention further provides a conjugate protein comprising atoxin-defective Clostridium novyi liposomase protein according to SEQ IDNO: 1 or according to SEQ ID NO: 1 with a substitution mutation in theGXSXG lipase motif; and a polypeptide ligand which binds to a receptoron a tumor cell. A polynucleotide which encodes the conjugate protein isalso provided.

The invention still further provides a composition comprising anisolated and purified polynucleotide encoding a toxin-defectiveClostridium novyi liposomase protein according to SEQ ID NO: 1 oraccording to SEQ ID NO: 1 with a substitution mutation in the GXSXGlipase motif.

These and other embodiments which will be apparent to those of skill inthe art upon reading the specification provide the art with a set oftools for treating cancers that can have widespread applicability acrossa range of tumors and a range of therapeutic agents.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1A-1D. Effects of treatment with C. novyi-NT plus Doxil. Micebearing the indicated tumors were treated on day 0 with variouscombinations of the indicated agents. Free doxorubicin plus C. novyi-NTspores resulted in deaths of all animals within two weeks and is notshown. Means and standard errors of data collected from at least fivemice per group are illustrated. The differences between C. novyi-NT plusDoxil and the other groups were significant (p<0.0006, log-rank test).FIGS. 1A and 1B show effect on CT26 tumors. FIGS. 1C and 1D show effecton HT116 tumors. FIGS. 1A and 1C show tumor volume and FIGS. 1B and 1Dshow percent survival.

FIG. 2A-2B. Pharmacokinetic distribution of Doxil after treatment withC. novyi-NT. (FIG. 2A) At 0 hours, Doxil was administered to athymicnude mice bearing tumors of ˜300 mm³ in size. Another group of mice wasintravenously injected with C. novyi-NT spores 16 hours prior to Doxil.Mice were sacrificed at the indicated time points and doxorubicinextracted from tissues and measured by fluorometry. Means and standarddeviations from three mice per time point are shown. (FIG. 2B) Tumorswere snap-frozen 16 hr after injection with Doxil and cryostat sectionsfrom the central regions examined using a fluorescence microscope. Thefluorescence signal from doxorubicin in liposomes is quenched (seeSupplementary Materials and Methods), while released doxorubicin emitsfluorescence at 590 nm. Colocalization of the doxorubicin fluorescenceand nuclear DNA, stained with DAPI, is observed in the tumors treatedwith C. novyi-NT spores.

FIG. 3A-3C. Biochemical purification and Identification ofLiposome-Disrupting activity. (FIG. 3A) C. novyi-NT was grown in mediumuntil late log phase and the medium cleared of cells throughcentrifugation. Following precipitation with 40% saturated ammoniumsulfate, ion exchange chromatography was performed and fractionsevaluated for liposome-disrupting activity. (FIG. 3B) The peak fractions(30-31) from (FIG. 3A) were pooled and fractionated by gel filtrationchromatography. (FIG. 3C) The peak fractions (29-30) from (FIG. 3B) werefractionated by SDS-polyacrylamide gel electrophoresis.

FIG. 4A-4D. Functional analysis of liposomase. Plasmids carrying the wtor mutant forms of the NT01CX2047 gene were introduced into E. coli.“Cured” bacteria represent those originally containing the wt gene andgrown in the absence of selective antibiotics until the plasmid waslost. Cellular lysates from three independent clones of each bacterialstrain were generated after induction of expression by IPTG and used forthe following: (FIG. 4A) Western blotting with an antibody tooligohistidine confirmed the presence of similar amounts of wt andmutant proteins in the bacteria. (FIG. 4B) Lipase activity was analyzedusing the fluorescent lipase substrate,1,2-dioleoyl-3-pyrenedecanoyl-rac-glycerol. (FIG. 4C)Liposome-disrupting activity was assessed using Doxil. (FIG. 4D)Liposome-disrupting activity of lipases purified from ten differentorganisms were assessed using Doxil. Means and standard deviations ofdata from at least two independent experiments are shown in (FIG. 4B) to(FIG. 4D).

FIG. 5. Effects of treatment with C. novyi-NT plus liposomal CPT-11.Mice bearing the indicated tumors were treated on day 0 with variouscombinations of the indicated agents. Means and standard errors of datacalculated from at least five mice per group are shown. The differencesbetween C. novyi-NT plus Doxil and the other groups were significant(p<0.0003, log-rank test).

FIG. 6A-6B. Liposome-disrupting activity. (FIG. 6A) Time course ofdoxorubicin release from Doxil in the presence of growth medium from C.novyi-NT cultures (“conditioned medium”). C. novyi-NT was grown untillate log phase and the medium cleared of cells via centrifugation.Significant liposome-disrupting activity was noted (red symbols) whileno increase in fluorescence was observed in the indicated controls.(FIG. 6B) Liposome-disrupting activity as a function of growth time inculture. C. novyi-NT spores were inoculated in growth medium andharvested at various times thereafter. Following clearance of bacterialcells, liposome-disrupting activity was measured in the supernatant andcorrelated with absorbance at 600 nm. Means and standard deviations ofdata from at least two independent assays of liposome-disruptingactivity are shown. Standard deviations are not visible when the barsrepresenting them are smaller than the symbol of the corresponding datapoint.

DETAILED DESCRIPTION OF THE INVENTION

The inventors have developed methods for treating tumors. The methodsenhance the tumor specificity of treatments, thereby reducing systemictoxicities. Using a combination of a protein made by C. novyi-NT andliposome encapsulated drugs or biological agents, the efficacy of tumorelimination is greatly increased. The protein, while having lipaseenzymatic activity appears to function non-enzymatically as a liposomedisrupter. The lipase enzyme activity is not necessary for the liposomedisrupting activity. Thus both wild-type and lipase-negative mutants canbe used for this function. Moreover, the lipsome-disrupting function canbe delivered by the protein as elaborated in situ by live C. novyi-NT,or by a cell-free preparation of the protein itself. Furthermore, theprotein can be delivered as part of a conjugate or fusion protein whichprovides additional desirable functionality to the liposomase protein.

One of the potential advantages of the approach described here is thatit is generally applicable to any chemotherapeutic drug or biologicalagent that can be encapsulated in a liposome. These include drugs of thefollowing categories as examples: topoisomerase inhibitors, DNAsynthesis inhibitors, cell division inhibitors, angiogenesis inhibitors,and microtubule inhibitors. Antibodies and antibody conjugates, such asrituxan, herceptin and erbitux, can also be encapsulated in a liposome.Further, cytokines and other bioactive proteins which may enhance thepatient's endogenous tumor-fighting systems may be used. Such cytokinescan include, without limitation: IL-2 and interferon-alfa 2b and GM-CSF.Particular drugs, cytokines, and antibodies which can be used withoutlimitation include: abarelix; aldesleukin; Alemtuzumab; alitretinoin;allopurinol; altretamine; amifostine; anakinra; anastrozole; arsenictrioxide; asparaginase; azacitidine; BCG Live; bevacizumab; bexarotenecapsules; bexarotene gel; bleomycin; bortezombi; bortezomib; busulfan;calusterone; capecitabine; carboplatin; carmustine; celecoxib;cetuximab; chlorambucil; cisplatin; cladribine; clofarabine;cyclophosphamide; cytarabine; dacarbazine; dactinomycin, actinomycin D;dalteparin sodium; darbepoetin alfa; dasatinib; daunorubicin;daunomycin; decitabine; denileukin; Denileukin diftitox; dexrazoxane;dexrazoxane; docetaxel; doxorubicin; dromostanolone propionate;eculizumab; Elliott's B Solution; epirubicin; epirubicin hcl; epoetinalfa; erlotinib; erlotinib; estramustine; etoposide phosphate;etoposide, VP-16; exemestane; fentanyl citrate; Filgrastim; floxuridine;fludarabine; fluorouracil, 5-FU; fulvestrant; gefitinib; gemcitabine;gemcitabine hcl; gemicitabine; gemtuzumab ozogamicin; goserelin acetate;histrelin acetate; hydroxyurea; Ibritumomab Tiuxetan; idarubicin;ifosfamide; imatinib mesylate; Interferon alfa-2a; Interferon alfa-2b;irinotecan; lapatinib ditosylate; lenalidomide; letrozole; leucovorin;leucovorin; leucovorin; leucovorin; Leuprolide Acetate; levamisole;lomustine, CCNU; meclorethamine, nitrogen mustard; megestrol acetate;melphalan, L-PAM; mercaptopurine, 6-MP; mesna; methotrexate;methoxsalen; mitomycin C; mitotane; mitoxantrone; nandrolonephenpropionate; nelarabine; Nofetumomab; Oprelvekin; oprelvekin;oxaliplatin; paclitaxel; paclitaxel protein-bound particles; palifermin;pamidronate; panitumumab; pegademase; pegaspargase; Pegfilgrastim;Peginterferon alfa-2b; pemetrexed disodium; pentostatin; pipobroman;plicamycin, mithramycin; porfimer sodium; procarbazine; quinacrine;Rasburicase; Rituximab; sargramostim; sorafenib; streptozocin;sunitinib; sunitinib maleate; talc; tamoxifen; temozolomide; teniposide,VM-26; testolactone; thalidomide; thioguanine, 6-TG; thiotepa;topotecan; topotecan hcl; toremifene; Tositumomab; Tositumomab/I-131tositumomab; trastuzumab; tretinoin, ATRA; Uracil Mustard; valrubicin;vinblastine; vincristine; vinorelbine; vorinostat; zoledronate; andzoledronic acid.

The gene encoding the liposomase has a sequence as shown in accessionno. CP000382 of GenBank (SEQ ID NO: 2). The protein has a sequence asshown in accession no. ABK60711 (SEQ ID NO: 1). The first 35 amino acidsare predicted to be cleaved as a signal sequence. Mutants having aminoacid substitutions in the highly-conserved GXSXG lipase motif (residues160-164 of SEQ ID NO: 1) also retain liposomase activity and can beused. For example, the S127G mutant (mutation at serine 162 in SEQ IDNO: 1) can be used to provide liposomase activity. Otherlipase-defective mutants can be used as well. Other substitutions ofSerine-127 (residue 162 in SEQ ID NO: 1) can be with amino acids A, C,D, E, F, G, H, I, K, L, M, N, P, Q, R, T, V, W, or Y.

Compositions according to the invention can be made before or afteradministration to a human or other mammal. Thus, components of thecompositions can be administered separately or mixed. If separately, thecomponents can be administered in any order. The components may form thecomposition when they are within a patient or other mammal. Thecomponents of the compositions can be packaged together or separately ina kit. Thus multiple vessels or containers within a single package maybe provided to an end-user. The end user may administer the componentsseparately or mixed, at one time or at more then one time.

Kits comprising the useful components for practicing the anti-tumormethods of the present invention can be packaged in a divided orundivided container, such as a carton, bottle, ampule, tube, etc. Thespores, liposomase, and anti-tumor agents can be packaged in, e.g.,dried, lyophilized, or liquid form. Additional components provided caninclude vehicles for reconsititution of dried components. Preferably allsuch vehicles are sterile and apyrogenic so that they are suitable forinjection into a mammal without causing adverse reactions. Theanti-tumor agents other than the spores are also preferably sterile. Thespores are preferably microbiologically pure, i.e., containing no otherbacteria other than the desired spore-forming anaerobe.

Methods for making liposomes are well known in the art. See for example,Mozafari, Cell Mol Biol Lett. 2005; 10(4):711-9; Andresen et al., ProgLipid Res. 2005 January; 44(1):68-97; Jensen et al., Mol Cancer Ther.2004 November; 3(11):1451-8; Pupo et al., J Control Release. 2005 May18; 104(2):379-96p; Brandl, Biotechnol Annu Rev. 2001; 7:59-85. Anytechnique known in the art for making liposomes may be used.

C. novyi spores can be prepared as is known in the art. Preferably thespores will be from a toxin-defective strain. See for example, U.S.Patent Application 20050079157, the contents of which are expresslyincorporated herein. Toxin can be eliminated by a process of curing of abacteriophage or plasmid. A C. novyi useful as a starting material (ATCC19402) can be obtained from the American Type Culture Collection, 10801University Boulevard, Manassas, Va., 20110-2209.

While strains need not be totally non-toxigenic, it is desirable that atleast one of the toxin genes be mutated, deleted, or otherwiseinactivated to render the bacteria less harmful to the host. If a toxingene is episomal or on a phage, then curing of the episome or phage canbe used to eliminate the toxin gene. Techniques are well known in theart for mutagenesis and screening of mutants and for curing episomes.

Isolated and bacteriologically pure vegetative bacteria or spores,according to the invention are those which are not contaminated withother bacteria or spores. Microbiological techniques for obtaining suchpure cultures are will known in the art. Typically single colonies arepicked and spread upon an agar nutrient medium, separating colonies sothat new colonies arise that are the progeny of single cells. Thisprocess is typically repeated to ensure pure cultures. Alternatively,liquid cultures can be serially diluted and plated for single colonyformation. Serial repetition is desirable to ensure colony formationfrom single cells. See, e.g., J. H. Miller, Experiments in MolecularGenetics, Cold Spring Harbor Laboratory, NY, 1972.

Spores, liposomase, liposomase conjugates, and nucleic acids encodingliposomase or fusion proteins of it, can be administered to atumor-bearing mammal by any means which will afford access to the tumor.Spores can be injected intravenously, intradermally, subcutaneously,intramuscularly, intraperitoneally, intratrumorally, intrathecally,surgically, etc. Preferred techniques are intravenous and intratumoralinjections. Tumor bearing mammals can be, for example, humans, pets,such as dogs and cats, agricultural animals such as cows, sheep, goatsand pigs, and laboratory animals, such as rats, hamsters, monkeys, mice,and rabbits.

The present delivery system is useful for protein therapy or genetherapy or a combination thereof. Thus the liposomase can be provided asa protein or as a polynucleotide encoding lipsomase. Similarly, theanti-tumor drug or biological agent may be a protein or apolynucleotide, as well as a small chemical entity, for example, not abiological polymer. Polynucleotides can be provided in a viral ornon-viral vector. Any vectors which are known in the art can be used,without limitation. The vector constructs may contain a tumor-specificpromoter to enhance the specificity of the treatment. Examples of suchpromoters are known in the art. CXCR4 promoter is tumor-specific inmelanomas; Hexokinase type II promoter is tumor-specific in lung cancer;TRPM4 (Transient Receptor Potential-Melastatin 4) promoter ispreferentially active in prostate cancer. The anti-tumor drug may be onethat directly or indirectly affects the tumor. Thus, for example, it canbe a protein which stimulates the native immune response to the tumor.Alternatively, it can be an antibody which mobilizes other immune systemcomponents to destroy tumor cells. Still other agents may be toxic totumor cells. The choice of agent is well within the skill of theartisan.

Conjugate proteins are post-translationally linked proteins; they may belinked by chemical linking of two polypeptides, directly or through anintermediate. Alternatively, the proteins may be linked viaco-translation of two coding regions within a single open reading frame.Any means for joining two polypeptides that are not linked in nature maybe used. One type of conjugate which can be used utilizes an antibodymolecule or portion thereof as a second protein. Thus, as an example,liposomase can be linked to a variable region of an antibody thusproviding the liposomase with a means of targeting to a particular sitein the body which expresses the antigen to which the antibody binds.Linkers may be used between portions of the conjugate proteins asdesired.

Isolated and purified liposomase protein according to the invention is apreparation in which the liposomase activity comprises at least 10%,25%, 40%, 55%, 70%, 85%, or 95% of the protein in a composition.Isolated and purified liposomase-encoding polynucleotide is one which isseparated from other genes of the C. novyi genome. Thus it is separatedfrom the genome-adjacent sequences encoding hypothetical proteinsNT01CX_(—)2046 and NT01CX_(—)2048. The complete genome of C. novyi-NThas been determined and is available at NCBI as NC_(—)008593. It is acircular DNA of 2,5478,720 nt.

The methods and compositions of the present invention can be applied toany tumor type. The principles upon which the invention relies (such asthe selective ability of liposomes to penetrate through the fenestratedendothelium present in tumors and a few other organs (8, 9), and theenhanced release of contents from a liposome in the presence ofliposomase,) apply to any tumor. Thus the present invention can be usedto treat tumors of the gastrointestinal tract, such as stomach,intestine, colon, rectum, esophagus, tumors of the kidney, breast, lung,liver, head and neck, and brain.

The above disclosure generally describes the present invention. Allreferences disclosed herein are expressly incorporated by reference. Amore complete understanding can be obtained by reference to thefollowing specific examples which are provided herein for purposes ofillustration only, and are not intended to limit the scope of theinvention.

Example 1 Materials and Methods

Cell Lines. HCT116 (CCL-247, human colorectal carcinoma) and CT26(CRL-2638, murine colorectal adenocarcinoma) were purchased from theAmerican Type Culture Collection. Both lines were grown in McCoy's 5AMedium (Invitrogen) supplemented with 5% FBS (Hyclone) at 37° C. in 5%CO₂

Reagents. Doxorubicin was purchased from Bedford Laboratories, Bedford,Ohio. PEGylated liposomal doxorubicin (DOXIL®) was purchased fromTibotec Therapeutics, Raritan, N.J. Chicken Egg L-α-Phosphatidylcholine(EPC), Hydrogenated Chicken Egg L-α-Phosphatidylcholine (HEPC),1,2-Distearoyl-sn-Glycero-3-Phosphoethanolamine-N-[Methoxy(Polyethyleneglycol)-2000] (DSPE-PEG₂₀₀₀) and Cholesterol (Chol) were purchased fromAvanti Polar Lipids, Alabaster, Ala. Irinotecan HCl (Camptosar) waspurchased from Pharmacia & Upjohn Co., Kalamazoo, Mich. CalcimycinA23187 and Triolein were obtained from Sigma (St. Louis, Mo.).1,2-dioleoyl-3-pyrenedecanoyl-rac-glycerol (DPG) was obtained fromMarkerGene Technologies (Eugene, Oreg.). A set of nine purified lipaseswere purchased from Fluka, Switzerland. C. novyi-NT spores were preparedas previously described (1).

Preparation of Liposomes. A mixture of HEPC:Chol:DSPE-PEG₂₀₀₀ at a molarratio of 50:45:5 was solubilized in chloroform and dried to a thin filmunder rotary evaporation then further dried under vacuum for 2 hours.The film was hydrated with 300 mM MnSO₄ and submerged in a 65° C.sonication bath Bransonic, Danbury, Conn.) to form Large MultilamellarVesicles (MLVs). This lipid suspension was extruded 10 times through adouble stack of 0.1 um Nuclepore filters (Whatman, Florham Park, N.J.)using a Lipex Thermobarrel Extruder (Northern Lipids, Vancouver, BC,Canada). The resulting colloidal suspension of Single Unilamellar.Vesicles (SUV) was filter-sterilized then dialysed against 300 mMsucrose at 4° C. to exchange the external milieu of the liposomes. Themean size of the SUVs was 100.2 nm (polydispersity index=0.129) asdetermined by quasi-elastic light scattering using a Malvern Zetasizer3000 (Malvern, Worcestershire, UK),

Liposomal CPT-11. CPT-11 was actively loaded into liposomes using aMnSO₄ pH gradient loading method (2-4). Irinotecan was mixed withliposomes at a drug:lipid molar ratio of 1:3 and incubated at 65° C. for10 mM. Calcimycin was then added at a ratio of 1 μg Calcimycin:10 mmollipids and the suspension incubated at 65° C. for 45 min. Thedrug-loaded liposomes were then filter-sterilized and dialyzed against300 mM sucrose at 4° C. to remove unencapsulated CPT-11. Dialysis wasperformed in the dark to minimize photo-degradation of the drug.Encapsulation efficiency was typically >99% as determined by disruptionof liposomes with 1-butanol and fluorometric measurement (excitation at390 nm, emission at 460 nm) using a fluorescence plate reader (FluostarGalaxy, BMG LabTech, GmbH). Concentrations were derived by reference toa CPT-11 standard curve.

Animal models. All animal experiments were overseen and approved by theAnimal Welfare Committee of Johns Hopkins University and were incompliance with University standards. Six- to 8-week old mice purchasedfrom Harlan Breeders, IN, were used for tumor implantation studies.Balb/c mice were used to establish CT26 tumors and athymic nu/nu micewere used to establish HCT116 xenografts. A minimum of five animals wereused for each experimental arm. Five million tumor cells were injectedsubcutaneously into the right flank of each mouse and allowed to growfor ˜10 days before randomization and treatment. C. novyi-NT spores wereadministered as a bolus tail vein injection of 300 million sporessuspended in 0.2 ml phosphate buffered saline. Free and liposomal drugsin the relevant arms were administered 16 hours later via the sameroute. The doses of Doxil, doxorubicin, liposomal irinotecan andirinotecan were 10 mg/kg and 25 mg/kg, respectively. Tumor volume wascalculated as length×width²×0.5.

Pharmacokinetic Study. HCT116 xenografts were established in athymicnu/nu mice and treated as described above. Tissue samples were harvestedat various times after treatment, suspended in 70% ethanol, 0.3 N HCland homogenized (Ultra-Turrax® T25 Basic, IKA, NC) to extractdoxorubicin. Following centrifugation, doxorubicin fluorescence(excitation at 470 nm, emission at 590 nm) in the supernatant wasmeasured with a fluorescence plate reader (FluoStar Galaxy, BMG LabTech,GmbH). Concentrations were derived by reference to a doxorubicinstandard curve.

Liposome-Disruption Assay. Samples were mixed with Doxil (100 μlsample+5 μl Doxil in a 96-well plate or 50 μl sample+2 μl DOXIL in a384-well plate). Increase in fluorescence caused by the dequenching ofreleased doxorubicin was kinetically measured over 30-60 minutes usingexcitation at 470 nm and emission at 590 nm (5). All measurements wereperformed at 37° C. in a fluorescence plate reader. A typical readout isshown in FIG. S1. Liposome-disrupting activity was defined as themaximum slope of the release curve.

Biochemical Purification. C. novyi-NT spores were inoculated into 20 mlBagadi Medium (6) and incubated in an anaerobic chamber (Type A, CoyLabs, Grass Lake, Mich.) at 37° C. for ˜16 hr. One ml of this starterculture was used to inoculate 100 ml Bagadi Medium that had beenpre-equilibrated in the anaerobic chamber. This culture was grown tolate log phase then centrifuged at 5,000 g to remove bacteria. Thesupernatant was precipitated with 50% saturated ammonium sulfate at 4°C. for 1 hour, then centrifuged at 5,000 g. After discarding thesupernatant, the pellet was solubilized in TN buffer (100 mM Tris-HCl,pH 7.5, 0.1 M NaCl) and filter-sterilized. All subsequent chromatographywas performed on an AKTA Purifier FPLC system (Amersham Biosciences,Piscataway, N.J.). The filtered sample was loaded onto a mono Q 5/50 GL(Amersham) column equilibrated in TN buffer. The proteins were elutedwith a linear gradient of ten column volumes formed from TN buffer and100 mM Tris-HCl 7.5, 1 M NaCl. The fractions collected were assayed fordoxorubicin releasing activity as described above. The two most activefractions from the mono Q column were pooled and loaded onto a HiLoad16/60 Superdex 200 (Amersham) column equilibrated in 100 mM Tris-HCl pH7.5, 0.5 M NaCl. The column was isocratically eluted with the samebuffer over 1.5 column volumes. The fractions were assayed fordoxorubicin disrupting activity as described above. Proteins in the twomost active fractions were separated by electrophoresis through anSDS-polyacrylamide gel and silver-stained using the SilverSNAP Stain KitII (Pierce, Rockford, Ill.). The single dominant band (≈45 kD) wasexcised for analysis by LC/MS/MS.

LC/MS/MS Peptide Analysis. The excised protein band was digested in-gelwith trypsin, and analyzed as previously described (7). In brief,purified tryptic fragments were injected onto a 150×0.3 mm Vydac reversephase column at 10 μL/min for 5 min in 5% buffer B using an Agilent 1100Series Capillary-LC system. Buffers A (0.1% acetic acid) and B (99.9%acetonitrile and 0.1% acetic acid) were employed in the liquidchromatography (LC) step of the LC/MS/MS analysis. Peptides were elutedfrom the column with a 10-65% buffer B gradient over 90 minutes at arate of 2 μL/min. Eluted peptides were detected by a LCQ DECA XP massspectrometer (Thermo, Mass.), equipped with an electrospray ionizationsource, a low flow metal needle assembly operating in data dependentmode. The method consisted of two scan events, a full scan and a seconddata dependent MS/MS scan. The dynamic mass range of the full scan wasset at 300 to 3000 m/z. The resulting MS/MS data dependent scan rejectedknown ‘contaminant’ masses of 371.0, 391.0, 445.0, 462.0, 1221.89,1321.9, 1421.9, 1521.8, 1521.9, 1621.9, 1721.9 and 1821.9 m/z. Othermethod settings included a default charge state set to 4, dynamicexclusion with repeat count set to 2, repeat duration 1 min, anexclusion list size of 25 and exclusion duration 3 min. All other methodparameters were default values set by the Xcaliber software v.1.2(Thermo, MA).

Cloning of oligohistidine-fusion proteins. The coding sequence ofNT01CX2047, devoid of its N-terminal secretion signal (as predicted bySignalP 3.0) was PCR-amplified with Phusion Taq Polymerase (Finnzymes,Espoo, Finland) using forward primer5′-TGCACCACCACCACCACCACAAAGAAAATCAAAAAGTATCACAAAATAATTATCCTATAATACTTTGTCATGG (SEQ ID NO: 3) and reverse primer5′-CTGACCGGTTTATTATTCAGTTACAGGAAGATTT CTAAGCATTTGAGCC (SEQ ID NO: 4).The (CAC)₆ sequence in the forward primer added six histidine residuesat the N-terminus of the encoded protein. This PCR product was digestedwith Age Ito create an insert with one sticky end. The cloning vectorpCR2.1/T7-GFP (Invitrogen, Carlsbad, Calif.) was digested with Nde I,blunted with T4 DNA polymerase, then digested with Age I to create asingle sticky end. The vector and insert were ligated to create pLip.The expected sequences of the inserts were verified by DNA sequencing.

Cloning of S127G and S127X variants. The pLip plasmid was digested withSnaB I to excise a 45 bp fragment containing the serine residue to bemutated. The pLip(S127G) plasmid was generated by blunt-end ligating thedigested plasmid with a replacement 45 bp double-strandedoligonucleotide of sequence 5′-GTAAAGTTCATTTAATAGGACACGGTCAAGGTGGACAAACTATAC (SEQ ID NO: 5). The plasmid pLip(S127X) plasmid wasgenerated in the same fashion using the double-stranded oligonucleotide5′-GTAAAGTTCATTTAATAGGACA CTAATAAGGTGGACAAACTATAC (SEQ ID NO: 6). Thetargeted alterations (underlined above) and orientation of the insertswere verified by DNA sequencing.

Protein Expression. The expression vectors described above weretransformed by heat shock into the Rosetta-gami(DE3)pLysS strain of E.coli (Novagen, Madison, Wis.). Three clones per expression constructwere picked and each was cultured in 20 ml HyperBroth (AthenaES,Baltimore, Md.) under antibiotic selection (100 μg/ml ampicillin+34μg/ml chloramphenicol) at room temperature. As a negative control,bacteria carrying the pLip plasmid were “cured” of their plasmid throughgrowth in the absence of selective antibiotics. Loss of plasmid wasverified by PCR. Expression was induced using IPTG for 1 hour, reachingan OD₆₀₀˜0.2, after which the bacteria were pelleted by centrifugationand resuspended in 100 mM Tris-HCl, pH 7.5. Lysates were prepared bysonication in a Bioruptor sonicating bath (Diagenode, Belgium) andcentrifugation at ˜14,000 g was performed to remove insoluble matter.Western Blotting using an α-polyHistidine mouse mAb (R&D Systems, MN)was used to confirm the presence of the expected proteins.

Lipase Assay. EPC:Triolein:DPG in a molar ratio of 2:5:1 were mixed inchloroform and dried to a thin lipid film under rotary evaporation, thendried further under high vacuum for 2 hours. The film was hydrated with100 mM glycine buffer, pH 9.5, 19 mM sodium deoxycholate to yield afinal DPG concentration of 1 mM. This suspension was vortexed vigorouslyto form an emulsion for use as a substrate. Samples were mixed with thissubstrate (30 μl sample+5 μl sample) in a 384-well plate). Increase influorescence caused by catalytic release of pyrenedecanoic acid waskinetically measured over 2 hours using excitation at 320 nm andemission at 405 nm. All measurements were performed at 37° C. in aFluoStar Galaxy fluorescence plate reader. Lipase Activity units werederived by reference to a Pseudomonas cepacia lipase standard curve. 1unit (U) corresponds to the equivalent amount of P. cepacia lipaseactivity which liberates 1 μmol per minute of oleic acid from triolein.

Lipase Panel Experiment. Purified NT01CX2047 enzyme and nine otherpurified lipases were dissolved in 100 mM Tris-HCl, pH 7.5 to aconcentration of 1 mg/ml. Fifty μl of Assay Buffer (100 mM Tris-HCl pH7.5+0.125M NaCl) was pipetted into 384-well plates, followed by 2 μl ofthe relevant lipase and 1 μl of DOXIL. Samples were assayed in duplicatefor liposome-disrupting activity as described above.

Example 2 Spores Plus Liposomes In Vivo in First Model

We used syngeneic CT26 colorectal tumors in BALB/c mice. C. novyi-NTspores were injected intravenously, and once germination had begun inthe tumors (˜16 hr after injection) a single dose of Doxil, at 10 mg/kg,was administered through the tail vein. Doxil is a liposomal formulationwhich encapsulates doxorubicin, a DNA-damaging agent and widely usedchemotherapeutic agent. Liposome-encapsulated doxorubicin has been shownto result in improved outcomes compared to unencapsulated doxorubicin ina variety of experimental and clinical studies (18-21). The liposomes inDoxil are surface modified by PEGylation to increase their circulationtime (18). As previously documented (11, 12), treatment with C. novyi-NTspores alone resulted in germination and necrosis within the centrallyhypoxic region of the tumor, but left a well-oxygenated viable rim thateventually regrew (FIG. 1A). Neither doxorubicin nor Doxil aloneresulted in prolonged therapeutic effects in these mice. When Doxil wascombined with C. novyi-NT spores, however, the effects were remarkable,resulting in complete regression of tumors in all mice (FIG. 1A) andcures in more than half of them (FIG. 1B). Notably, mice treated with C.novyi-NT and free doxorubicin at the same dose exhibited dramaticmorbidity, with 100% of mice dying within 2 weeks, emphasizing thecrucial role of liposomal encapsulation in reducing systemic toxicity(18).

Example 3 Spores Plus Liposomes In Vivo in Second Model

To determine whether these pronounced anti-tumor effects could beobserved in other tumor model systems, we treated human colorectalcancer xenografts [HCT116] growing in nude mice in the same way. Asshown in FIGS. 1C and D, C. novyi-NT spores, when used in combinationwith Doxil, resulted in HCT116 tumor regressions similar to thoseobserved with CT26 tumors. The dose of liposomal doxorubicin used inthese tumor models was matched to those currently used in the clinic totreat cancer patients (19-21).

Example 4 Distribution of Doxil in Vivo

The synergistic effects observed in the experiments described above werepresumably due to an increased concentration of doxorubicin in tumors asa result of C. novyi-NT infection. To substantiate this conjecture, thedistribution of doxorubicin in mice receiving Doxil alone was comparedwith that in mice treated with Doxil plus C. novyi-NT spores. As shownin FIG. 2A, there was a remarkable increase in the intratumoralconcentration of doxorubicin when Doxil was administered in the presenceof C. novyi-NT. In contrast, the levels of doxorubicin in the heart,liver, spleen, kidney and muscle were similar in the presence or absenceof spores (FIG. 2A). The doxorubicin found in infected tumors had beenreleased from liposomes and was bound to tumor cell nuclei, as revealedby immunofluorescence (FIG. 2B). Note that the concentration ofdoxorubicin in conventionally-treated tumors was previously shown to behigher and more stable after administration of Doxil than afteradministration of doxorubicin (22). In effect, the administration of C.novyi-NT spores plus Doxil resulted in a greater than 100-fold increasein tumor drug exposure compared to that achieved with an equivalent doseof free doxorubicin, without increasing drug concentrations in normaltissues.

Example 5 Attempted Identification of Likely Lipsome-Disrupting Factor

We next attempted to identify the mechanism underlying the ability of C.novyi-NT to release doxorubicin in tumors following injection of Doxil.We found that culture medium conditioned by the growth of C. novyi-NTcontained a robust liposome-disrupting factor and that the concentrationof this factor was maximum in late log phase (FIG. 6). We anticipatedthat this factor would be a phospholipase, as these enzymes are known todisrupt the lipid bilayers of liposomes as well as those of erythrocytes(17). Two phospholipase C enzymes have been purified from C. novyi andone of them possesses hemolytic activity (23-25). The C. novyi-NT genomecontains four genes predicted to encode phospholipases (26). One ofthese four genes (NT01CX0979) encoded an extracellular phospholipase Cprotein (23, 25) which was expressed at high levels in growing bacteria(26).

Because C. novyi-NT has so far proved recalcitrant to transformation byexogenous DNA, we resorted to a different strategy to test thehypothesis that the liposome-disrupting factor was the phospholipase CNT01CX0979. Following MNNG-mediated mutagenesis, we plated ˜10,000bacteria on blood-agar plates and identified one colony whichreproducibly lacked hemolytic activity. This clone was demonstrated byDNA sequencing to possess a 971G>A transition within the NT01CX0979phospholipase C gene, resulting in a mutation from a well-conservedglycine to a glutamine (25). Surprisingly, the growth media of thishemolysis-negative clone retained its liposome-disrupting activity,indicating that this activity was not the result of NT01CX0979 or indeedof any other enzyme sufficient for hemolysis.

Example 6 Identification of Liposome-Disrupting Factor and its CodingSequence

To identify the liposome-disrupting factor, we fractionated the growthmedium from late log-phase C. novyi-NT via a combination of ammoniumsulfate precipitation, ion exchange chromatography and gel filtration. Asingle, major peak of liposome-disrupting activity was observed (FIG.3A, B). SDS-polyacrylamide gel electrophoresis revealed a predominantsilver-staining band in the active fractions (FIG. 3C). This band waspurified, digested by trypsin, and analyzed by liquidchromatography-tandem mass spectrometry. Using the C. novyi-NT genome asthe reference, the polypeptide was found to be encoded by NT01CX2047, aputative lipase. The two extracellular lipases identified in the C.novyi-NT genome (NT01CX0630 and NT01CX2047) were not highly homologousto each other (47% aa identity) or to their closest counterparts inother bacteria (50˜55% aa identity to a C. tetani lipase). Theidentification of the liposome-disrupting factor as the product ofNT01CX2047 was consistent with information from the genomic analysis ofC. novyi-NT, which revealed that NT01CX2047 was preferentially expressedin late log phase, was predicted to be extracellular, and was highlyexpressed in tumors after infection with C. novyi-NT (26).

Example 7 Cloning of ORF of Liposome-Disrupting Factor

To examine the properties of the protein encoded by NT01CX2047, wecloned its ORF into an inducible expression vector which was thenintroduced into a genetically modified E. coli strain that permittedexpression of C. novyi-NT genes (which have a codon usage very differentthan that of E. coli). Following induction of protein expression byIPTG, the transformed E. coli cells grew poorly, presumably because thegene product was toxic. Lysates from these cells were tested for lipaseactivity as measured by hydrolysis of1,2-dioleoyl-3-pyrenedecanoyl-rac-glycerol. The NT01CX2047-expressingclones exhibited lipase activity, whereas clones cured of the vector(described below) did not (FIG. 4B). As a further control, a derivativewas generated in which a stop codon was substituted for the serineresidue at amino acid 127 (S127X). We also generated a mutant in whichthe serine at residue 127 was replaced by glycine (S127G). S127 is foundwithin the highly-conserved GXSXG lipase motif and was predicted to bethe essential catalytic serine responsible for lipase activity (27).Accordingly, both the S127G missense mutant and the S127X truncationmutant were devoid of lipase activity though each produced similaramounts of NT01CX2047 polypeptide (FIG. 4A, B). Interestingly, thenon-catalytic S127G mutant exhibited the same poor growth as wild-typeNT01CX2047, whereas the S127X mutant grew much more robustly. Theapparent toxicity of the S127G mutant, which had no lipase activity, waspuzzling but was illuminated by the experiments described below.

Example 8 Genetic Separation of Lipase Activity and Liposome-DisruptingActivity

To test the liposome-disrupting activity of the lysates described above,we incubated them with liposomal doxorubicin. The strains containing thewild-type form of NT01CX2047 possessed potent activity in this assay(FIG. 4C). When this strain was cultured without selective antibioticsuntil the bacteria lost the expression vector by random segregation, theliposome-disrupting activity was lost (FIG. 4C). Moreover, the cellsthat had lost the plasmid were able to grow as robustly as the parentalE. coli and the S127X mutant. As expected, the S127X truncation mutanthad no detectable liposome-disrupting activity (FIG. 4C). Surprisingly,however, the S127G mutant, which was devoid of lipase activity, retainedsubstantial liposome-disrupting activity (FIG. 4C). To determine whetherthe ability to disrupt liposomes was particular to the NT01CX2047 lipaseof C. novyi-NT, we tested the liposome-disrupting activities of ninecommercially available enzymes with well-defined lipase activity; nonehad significant liposome-disrupting activity (FIG. 4D).

Example 9 Liposomes with Other Agents Also Effective

Accordingly, we tested liposomes containing CPT-11 (irinotecan), atopoisomerase inhibitor that, like doxorubicin, is widely used in cancertherapy. Single doses of liposomal CPT-11 were injected alone or 16hours after C. novyi-NT administration, just as in the Doxilexperiments. Both tumor types (CT26 in syngeneic mice and humancolorectal cancer cell xenografts in nude mice) were relativelyresistant to liposomal CPT-11 when injected alone. However, in thepresence of spores, all tumors regressed and long-term cures wereachieved in >60% of the mice (FIG. 5).

It was also notable in these and the liposomal doxorubicin experimentsthat the liposomase strategy was effective in small as well as in largetumors, with cures observed in tumors as small as 136 mm³ in volume. Inprevious studies, small tumors proved to be resistant to bacteriolytictherapies because of the relatively small regions of necrosis withinthem (11). We suspect that liposomal drugs and C. novyi-NT spores areeffective in combination because they mutually reinforce one another:the cytotoxic drug accumulated in the tumor through the EPR effect leadsto necrosis and hypoxia, which leads to C. novyi-NT germination, whichleads in turn to more release of the drug through liposomase.

Part of the release of doxorubicin from Doxil in tumors (FIG. 2) couldtheoretically be due to other enzymes released from C. novyi-NT orinfected tumor cells. However, the major Doxil-disrupting factorsecreted from C. novyi-NT is liposomase (FIG. 3) and its gene isexpressed at high levels in infected tumors (26), suggesting thatliposomase significantly contributes to the in vivo effects. Moreover,now that liposomase has been identified and cloned, it can beincorporated into other anti-cancer strategies. These strategies includecancer gene therapy employing viral or non-viral delivery systems andantibody-directed enzyme prodrug therapy (3, 4, 31, 32). In the past,such approaches have been limited by the small repertoire of prodrugsavailable and the necessity of getting the drug metabolized within acell to exert a bystander effect on other tumor cells (31, 32). Withliposomase, a large variety of “prodrugs” are already commerciallyavailable, as any chemotherapeutic agent that can be encapsulated in aliposome could theoretically be used. Multi-drug therapy, with each drugcombined in a separate liposome, can also be envisaged. Finally, becauseliposomase is secreted and liposomes are external to the tumor cells,substantial bystander effects are to be expected.

REFERENCES

The disclosure of each reference cited is expressly incorporated herein.

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1. A composition comprising: toxin-defective Clostridium novyi spores;and a liposome comprising an anti-tumor drug or biological agent.
 2. Acomposition comprising: a toxin-defective Clostridium novyi liposomaseaccording to SEQ ID NO: 1 or according to SEQ ID NO: 1 with asubstitution mutation in the GXSXG lipase motif at residues 160-164; anda liposome comprising an anti-tumor drug or biological agent.
 3. Thecomposition of claim 1 or 2 wherein the composition is formed in vivo.4. The composition of claim 1 or 2 wherein the anti-tumor drug orbiological agent is doxorubicin.
 5. The composition of claim 1 or 2wherein the anti-tumor drug or biological agent is irinotecan.
 6. Thecomposition of claim 1 or 2 wherein the anti-tumor drug or biologicalagent is an antibody.
 7. The composition of claim 1 or 2 wherein theanti-tumor drug or biological agent is a polynucleotide.
 8. Thecomposition of claim 1 or 2 wherein the anti-tumor drug or biologicalagent is a polynucleotide in a viral vector.
 9. The composition of claim1 or 2 wherein the anti-tumor drug or biological agent is apolynucleotide in a non-viral vector.
 10. The composition of claim 1 or2 wherein the anti-tumor drug or biological agent is a protein.
 11. Thecomposition of claim 1 or 2 wherein the anti-tumor drug or biologicalagent is a cytokine.
 12. A kit comprising: a toxin-defective Clostridiumnovyi liposomase according to SEQ ID NO: 1 or according to SEQ ID NO: 1with a substitution mutation in the GXSXG lipase motif at residues160-164; and a liposome comprising an anti-tumor drug or biologicalagent.
 13. A kit comprising: toxin-defective Clostridium novyi spores;and a liposome comprising an anti-tumor drug or biological agent. 14.The kit of claim 12 or 13 wherein the anti-tumor drug or biologicalagent is doxorubicin.
 15. The kit of claim 12 or 13 wherein theanti-tumor drug or biological agent is irinotecan.
 16. The kit of claim12 or 13 wherein the anti-tumor drug or biological agent is an antibody.17. The kit of claim 12 or 13 wherein the anti-tumor drug or biologicalagent is a polynucleotide.
 18. The kit of claim 12 or 13 wherein theanti-tumor drug or biological agent is a polynucleotide in a viralvector.
 19. The kit of claim 12 or 13 wherein the anti-tumor drug orbiological agent is a polynucleotide in a non-viral vector.
 20. A methodof treating a tumor bearing mammal, comprising: administering to thetumor bearing mammal a first agent which is toxin-defective Clostridiumnovyi spores and a second agent which is a liposome comprising ananti-tumor drug or biological agent, whereby the tumor regresses or itsgrowth is slowed or arrested.
 21. A method of treating a tumor bearingmammal, comprising: administering to the tumor bearing mammal a firstagent which is a toxin-defective Clostridium novyi liposomase accordingto SEQ ID NO: 1 or according to SEQ ID NO: 1 with a substitutionmutation in the GXSXG lipase motif at residues 160-164 and a secondagent which is a liposome comprising an anti-tumor drug or biologicalagent, whereby the tumor regresses or its growth is slowed or arrested.22. A method of treating a tumor bearing mammal, comprising:administering to the tumor bearing mammal a first agent which is avector encoding toxin-defective Clostridium novyi liposomase accordingto SEQ ID NO: 1 or according to SEQ ID NO: 1 with a substitutionmutation in the GXSXG lipase motif at residues 160-164 and a secondagent which is a liposome comprising an anti-tumor drug or biologicalagent, whereby the tumor regresses or its growth is slowed or arrested.23. The method of claim 20, 21, or 22 wherein the first agent and thesecond agent are administered sequentially.
 24. The method of claim 20,21, or 22 wherein the first agent and the second agent are administeredsimultaneously.
 25. The method of claim 20, 21, or 22 wherein theanti-tumor drug or biological agent is doxorubicin.
 26. The method ofclaim 20, 21, or 22 wherein the anti-tumor drug or biological agent isirinotecan.
 27. The method of claim 20, 21, or 22 wherein the anti-tumordrug or biological agent is an antibody.
 28. The method of claim 20, 21,or 22 wherein the anti-tumor drug or biological agent is apolynucleotide.
 29. The method of claim 20, 21, or 22 wherein theanti-tumor drug or biological agent is a polynucleotide in a viralvector.
 30. The method of claim 20, 21, or 22 wherein the anti-tumordrug or biological agent is a polynucleotide in a non-viral vector. 31.The method of claim 22 wherein the vector is a viral vector.
 32. Themethod of claim 22 wherein the vector is a non-viral vector.
 33. Acomposition comprising an isolated and purified toxin-defectiveClostridium novyi liposomase protein according to SEQ ID NO: 1 oraccording to SEQ ID NO: 1 with a substitution mutation in the GXSXGlipase motif at residues 160-164.
 34. A conjugate protein comprising: atoxin-defective Clostridium novyi liposomase protein according to SEQ IDNO: 1 or according to SEQ ID NO: 1 with a substitution mutation in theGXSXG lipase motif at residues 160-164; and a polypeptide ligand whichbinds to a receptor on a tumor cell.
 35. The conjugate protein of claim34 wherein the polypeptide ligand is a variable region of a heavy orlight chain of an antibody.
 36. The conjugate protein of claim 34further comprising a linker peptide between the liposomase protein andthe polypeptide ligand.
 37. The conjugate protein of claim 34 whereinthe polypeptide ligand comprises a variable region of a heavy chain anda variable region of a light chain of an antibody.
 38. The conjugateprotein of claim 37 which comprises a linker peptide between thevariable region of the heavy chain and the variable region of the lightchain.
 39. The conjugate protein of claim 34 which ispost-translationally conjugated.
 40. The conjugate protein of claim 34which is translated as a single polypeptide chain.
 41. A polynucleotidewhich encodes the conjugate protein of claim
 40. 42. A compositioncomprising an isolated and purified polynucleotide encoding atoxin-defective Clostridium novyi liposomase protein according to SEQ IDNO: 1 or according to SEQ ID NO: 1 with a substitution mutation in theGXSXG lipase motif at residues 160-164.
 43. The composition of claim 42wherein the polynucleotide comprises a nucleotide sequence according toSEQ ID NO:
 2. 44. The composition of claim 42 wherein the polynucleotidecomprises a vector.
 45. The composition of claim 42 wherein thepolynucleotide comprises a viral vector.
 46. The composition of claim 42wherein the polynucleotide comprises a non-viral vector.
 47. Thecomposition of claim 42 wherein the polynucleotide comprises a promoterwhich is at least two-fold more transcriptionally active in a tumor thanin a normal tissue.
 48. The method of claim 20 wherein the tumor bearingmammal is a human.
 49. The method of claim 20 wherein the tumor bearingmammal is a pet.
 50. The method of claim 20 wherein the tumor bearingmammal is an agricultural animal.
 51. The method of claim 20 wherein thetumor bearing mammal is a laboratory animal.
 52. The method of claim 49wherein the pet is a dog.
 53. The method of claim 1 wherein theanti-tumor drug or biological agent is a topoisomerase inhibitor. 54.The method of claim 1 wherein the anti-tumor drug or biological agent isa DNA synthesis inhibitor.